Публикувани во рецензирани часописи:

1. Ljupco Kocarev and Toni Stojanovski, "On Chaotic Synchronization and Secure Communications", IEICE Trans. on Fundamentals of Electronics, Communications and Computer Sciences, vol. E-78A, no. 9, pp. 1142-1147, (Sept. 1995).
2. Ljupco Kocarev and Toni Stojanovski, "Linear Conjugacy of Vector Fields in Lur'e form", IEEE Trans. on Circuits and Systems, Part I, vol. 43 (9), pp. 782-758, Sept. 1996.
3. Urlich Parlitz, Ljupco Kocarev, Toni Stojanovski, and Hans Preckel, "Encoding Messages Using Chaotic Synchronization", Phys. Rev. E, vol. 53, pp. 4351-4361, 1996.
4. Ljupco Kocarev, Urlich Parlitz, and Toni Stojanovski, "An Application of Synchronized Chaotic Dynamic Arrays", Phys. Letters A, vol. 217, pp. 280-284, 1996.
5. Toni Stojanovski, Ljupco Kocarev, and Urlich Parlitz, "Driving and Synchronizing by Chaotic Impulses", Phys. Rev. E, vol. 54, pp. 2128-2131, Aug. 1996.
6. Toni Stojanovski, Ljupco Kocarev, Urlich Parlitz, and Richard Harris, "Sporadic driving of dynamical systems", Phys. Rev. E, vol. 55, pp. 4035-4048, April 1997.
7. Toni Stojanovski, Ljupco Kocarev, and Urlich Parlitz, "Digital Coding via Chaotic Systems", IEEE Trans. on Circuits and Systems, Part I., vol. 44(6), pp. 562-565, June 1997.
8. Toni Stojanovski, Ljupco Kocarev, and Urlich Parlitz, "A Simple Method to Reveal the Parameters of the Lorenz System", International Journal on Bifurcation and Chaos, vol. 6(12B), pp. 2645-2652, 1996.
9. Ljupco Kocarev, Urlich Parlitz, Toni Stojanovski, and Predrag Janjic, "Controlling Spatiotemporal Chaos in Coupled Nonlinear Oscillators", Phys. Rev. E, vol. 56(1), pp. 1238-1241, July 1997.
10. Ljupco Kocarev, Zarko Tasev, Toni Stojanovski, and Urlich Parlitz, "Synchronizing Spatiotemporal Chaos", Chaos, vol. 7(4), pp. 635-643, 1997.
11. Toni Stojanovski, Urlich Parlitz, Ljupco Kocarev, and Richard Harris, "Exploiting Delay Reconstruction for Chaos Synchronisation", Phys. Letters A,  vol. 233, pp. 355-360, 1997.
12. Toni Stojanovski, Ljupco Kocarev, and Richard Harris, "Applications of Symbolic Dynamics in Chaos Synchronization", IEEE Trans. on Circuits and Systems, Part I, Special Issue on Chaos Synchronization and Control: Theory and Applications, vol. 44(10), pp. 1014 - 1018, October 1997.
13. Urlich Parlitz, Ljupco Kocarev, Toni Stojanovski, and L. Junge , "Chaos Synchronisation Using Sporadic Driving", Physica D, vol. 109 (1-2), pp. 139-152, 1997.
14. Ljupco Kocarev, Predrag Janjic, Urlich Parlitz, and Toni Stojanovski , "Controlling Spatiotemporal Chaos in Coupled Oscillators by Sporadic Driving", Chaos, Solitons and Fractals, vol. 9(1/2), pp. 283-293, 1998.
15. Toni Stojanovski, L. Kocarev, “Chaos based random number generators Part I: Analysis”. IEEE Trans. on CAS-I, 43(3), pp.281-288, 2001.
16. Toni Stojanovski, J. Pihl, L. Kocarev, “Chaos based random number generators Part Ⅱ: Practical realization”, IEEE Trans. on CAS-I, vol.43(3), pp.382-385, 2001.
17. Toni Stojanovski, Tomislav Dzekov, “Rapid Application Development Using Software Factories”, Годишен зборник на трудови на ЕУРМ, 2009.

Презентирани на конференции:

1. Ljupco Kocarev and Toni Stojanovski, "A Model for Secret-Key Cryptography Using Chaotic Synchronization", Proc. of the Int. Symposium on Information Theory and Its Applications ISITA '94, Sydney 20-24 Nov. 1994, pp. 251-255.
2. Ljupco Kocarev and Toni Stojanovski, "Chaos Synchronization and Its Application", Proc. of the IASTED Int. Conf. on Modelling and Simulation '95, Colombo 25-28 July 1995, pp. 268-271.
3. Ljupco Kocarev, Toni Stojanovski, Zarko Tasev, "On Nonlinear Phenomena in Linear Arrays of Electrical Circuits", Proceedings of the European Conference of Circuit theory and Desing ECCTD '95, Istanbul, Turkey Aug. 1995, pp. 1145-1148.
4.  Ljupco Kocarev, Urlich Parlitz, Toni Stojanovski, "Generalized Synchronization of Chaotic Signals", Proc. of the Int. Symposium on Nonlinear Theory and Its Applications NOLTA '95, Las Vegas 10-14 Dec. 1995, pp. 953-956.
5. Ljupco Kocarev, Urlich Parlitz, Toni Stojanovski, Ljupco Panovski, "Generalized Synchronization of Chaos", Proc. of the IEEE Symposium on Circuits and Systems ISCAS '96, Vo. 3, pp. 116-119.
6. Toni Stojanovski, Ljupco Kocarev, Urlich Parlitz, and Richard Harris, "How to Achieve Synchronized Motion with a Finite Number of Samples", Proc. of the Int. Symposium on Nonlinear Theory and Its Applications NOLTA '96, Kochi, Japan 7-9 Oct. 1996, pp. 83-66.
7. Toni Stojanovski, Ljupco Kocarev, Urlich Parlitz, and Richard Harris, "Sporadic Driving of Dynamical Systems", Proc. of the Int. Symposium on Nonlinear Theory and Its Applications NOLTA '96, Kochi, Japan 7-9 Oct. 1996, pp. 333-336.
8. Toni Stojanovski, Ljupco Kocarev, Urlich Parlitz, and Richard Harris, "Digital Chaotic Encoding of Digital Information", Proc. of the IEEE Symposium on Circuits and Systems ISCAS 97, June 1997, Hong Kong, pp. 1057-1060.
9. Ljupco Kocarev, Goce Jakimoski, Toni Stojanovski, and Ulrich Parlitz, "From Chaotic Maps to Encryption Schemes ", IEEE International Symposium on Circuits and Systems ISCAS 98, May 31-June 3, 1998, Monterey, California, USA.
10.  T. Stojanovski, I. Atanasova “Zero-cost measures for personal data security”, pp. 3-9, CITYR 2009, Skopje (in conference proceedings).
11. I. Skrceska, L. Krstevski, T. Stojanovski, “One year experience with using video conferencing in high education”, ICT Innovations 2009 conference Ohrid Macedonia (poster).
12. T. Stojanovski, I. Skrceska, “Building manageable web applications using software factory”, ICT Innovations 2009 conference, Ohrid Macedonia (workshop paper).
13. T. Stojanovski, “Advances in ICT in Education”, 2009 IACBE European Region Meeting & Workshops, Skopje Macedonia.
14. Aleksandar Ivanovski, Toni Stojanovski, "Software protection using Obfuscation", ISSN 1857-7180, CITYR 2010, Ohrid, Macedonia.
15. Vladimir Nasteski, Toni Stojanovski, "A study of the MD5 Collisions", ISSN 1857-7180, CITYR 2010, Ohrid, Macedonia.
16. Jordan Vrtanoski, Toni Stojanovski, “Order Handling in Convergent Environments”, 2nd International Conference on e-Education, e-Business, e-Management and E-Learning IC4E 2011, 7-9, January 2011, Mumbai, India. pp. 378-382.
17. Ninoslav Marina, Toni Stojanovski, and H. Vincent Poor, "Improvement of the Information-Theoretic Secrecy by Smart Cooperation", submitted for presentation at 2011 IEEE Information Theory Workshop (ITW 2011), Paraty, Brazil.
18. Toni Stojanovski, and Ljupco Krstevski, "On the Performance of Exhaustive Search with Cooperating agents", submitted for presentation at ETAI 2011.
19. Toni Stojanovski, Marko Vučković, and Ivan Velinov, "Empirical study of performance of data binding in ASP.NET web applications", submitted for presentation at ETAI 2011.
20. Toni Stojanovski and Tatjana Ulcar-Stavrova, "Data Compression Using Lempel-Ziv Algorithm and Adaptive Huffman Method", Conference on Electronics, Telecommunications and Computer Science ETAI 1993, September 1993, Ohrid, Macedonia (in Macedonian).
21. Cvetan Gavrovski, Toni Stojanovski, Ljubomir Strezov, "Simple Method of Acquisition and Analysis of Pulse Detector Response in Ionizing Radiation Field", Conference on Electronics, Telecommunications and Computer Science ETAI 1993, September 1993, Ohrid, Macedonia (in Macedonian).